Cre05.g237700.t1.2 nucleolar RNA-binding Nop10p family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre05.g237700.t1.2 chromosome_5 nucleolar RNA-binding Nop10p family protein CDS 2844181 2845479 - 1 298

Phytozome

Locus Genomic View Functional Annotation
Cre05.g237700.t1.2 Cre05.g237700.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
NOP10 g5469.t1, Cre05.g237700.t1.1 JGI176419 30783042 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0052
motif_0052_1

motif_0052_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
17
Motif Bicluster: 
bicluster_0052
Width: 
13
Number of Sites: 
1
Consensus: 
AGcAGCAGCaGCA
motif_0052_2

motif_0052_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
80
Motif Bicluster: 
bicluster_0052
Width: 
21
Number of Sites: 
1
Consensus: 
GtggtGGTGGcGgTGGnGgTG
 0.13
bicluster_0180
motif_0180_1

motif_0180_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
110
Motif Bicluster: 
bicluster_0180
Width: 
24
Number of Sites: 
1
Consensus: 
GcTncTGGtgnTGCcgGTgcnGnt
motif_0180_2

motif_0180_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1900
Motif Bicluster: 
bicluster_0180
Width: 
21
Number of Sites: 
1
Consensus: 
TGcATtgagAcaCgCAcACAC
 0.18

GO Terms

GO:0030515 GO:0001522 GO:0042254 GO:0072588 -

snoRNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with small nucleolar RNA.

pseudouridine synthesis

GO Category: 
biological_process
Details: 
The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.

ribosome biogenesis

GO Category: 
biological_process
Details: 
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

box H/ACA RNP complex

GO Category: 
cellular_component
Details: 
A ribonucleoprotein complex that contains an RNA of the box H/ACA type, a subtype of the small nucleolar RNA (snoRNA) family. RNA pseudouridylation (isomerization of uridine to pseudouridine) is the major, and most likely the ancestral, function of H/ACA RNPs, although some have evolved other functions. Pseudouridylation targets include both large and small ribosomal RNAs (rRNAs), and on U2 small nuclear RNA (U2 snRNA).

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI176419

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