Cre05.g238332.t1.1 photosystem I subunit D-2

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre05.g238332.t1.1 chromosome_5 photosystem I subunit D-2 CDS 2978242 2979235 - 993

Phytozome

Locus Genomic View Functional Annotation
Cre05.g238332.t1.1 Cre05.g238332.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
PSAD g5492.t1, Cre56.g791050.t1.1, Cre56.g791050.t1.2 Not available 30782977 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0034
motif_0034_1

motif_0034_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.028
Motif Bicluster: 
bicluster_0034
Width: 
20
Number of Sites: 
1
Consensus: 
tnAccAttATTTAttAAtAt
motif_0034_2

motif_0034_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3.1
Motif Bicluster: 
bicluster_0034
Width: 
24
Number of Sites: 
1
Consensus: 
cAaATgCAGTAGCtncagCagcaG
 0.10
bicluster_0062
motif_0062_1

motif_0062_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.8
Motif Bicluster: 
bicluster_0062
Width: 
23
Number of Sites: 
1
Consensus: 
gCTgCtGttgctGCTGtcaCTGc
motif_0062_2

motif_0062_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
11000
Motif Bicluster: 
bicluster_0062
Width: 
11
Number of Sites: 
1
Consensus: 
ATGGGTGTTGc
 0.07

GO Terms

GO:0015979 GO:0009522 GO:0009538 -

photosynthesis

GO Category: 
biological_process
Details: 
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.

photosystem I

GO Category: 
cellular_component
Details: 
A photosystem that contains an iron-sulfur reaction center associated with accessory pigments and electron carriers. In cyanobacteria and chloroplasts, photosystem I functions as a light-dependent plastocyanin-ferredoxin oxidoreductase, transferring electrons from plastocyanin to ferredoxin; in photosynthetic bacteria that have only a single type I photosystem, such as the green sulfur bacteria, electrons can go either to ferredoxin (Fd) -> NAD+ or to menaquinone (MK) -> Cytb/FeS -> Cytc555 -> photosystem I (cyclic photophosphorylation).

photosystem I reaction center

GO Category: 
cellular_component
Details: 
A photochemical system containing P700, the chlorophyll a dimer that functions as a primary electron donor. Functioning as a light-dependent plastocyanin-ferredoxin oxidoreductase, it transfers electrons from plastocyanin to ferredoxin.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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