Cre06.g260800.t1.2 protein binding

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre06.g260800.t1.2 chromosome_6 protein binding CDS 1628404 1631549 - 3 145

Phytozome

Locus Genomic View Functional Annotation
Cre06.g260800.t1.2 Cre06.g260800.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g5861.t1, Cre06.g260800.t1.1 JGI400848 30779464 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0198
motif_0198_1

motif_0198_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0008
Motif Bicluster: 
bicluster_0198
Width: 
24
Number of Sites: 
1
Consensus: 
gcgGCAgcaGccgcgGCaGtgGCg
motif_0198_2

motif_0198_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.5
Motif Bicluster: 
bicluster_0198
Width: 
21
Number of Sites: 
1
Consensus: 
cCagCCcCgCCGCCgCCgCCg
 0.31
bicluster_0200
motif_0200_1

motif_0200_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.061
Motif Bicluster: 
bicluster_0200
Width: 
24
Number of Sites: 
1
Consensus: 
TttnnatAnaAcAtttngataCAt
motif_0200_2

motif_0200_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
19
Motif Bicluster: 
bicluster_0200
Width: 
21
Number of Sites: 
1
Consensus: 
TCAaCatgAnnAtAGgAAACT
 0.29

GO Terms

GO:0030041 GO:0034314 GO:0005856 GO:0005885 -

actin filament polymerization

GO Category: 
biological_process
Details: 
Assembly of actin filaments by the addition of actin monomers to a filament.

Arp2/3 complex-mediated actin nucleation

GO Category: 
biological_process
Details: 
The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins.

cytoskeleton

GO Category: 
cellular_component
Details: 
Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.

Arp2/3 protein complex

GO Category: 
cellular_component
Details: 
A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI400848

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