Cre06.g261000.t1.2 photosystem II subunit R

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre06.g261000.t1.2 chromosome_6 photosystem II subunit R CDS 1651220 1652875 + 1 655

Phytozome

Locus Genomic View Functional Annotation
Cre06.g261000.t1.2 Cre06.g261000.t1.2

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g5866.t1, Cre06.g261000.t1.1 JGI98021 30779314 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0074
motif_0074_1

motif_0074_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000018
Motif Bicluster: 
bicluster_0074
Width: 
15
Number of Sites: 
1
Consensus: 
CaGCAGcAGCaaCAG
motif_0074_2

motif_0074_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0069
Motif Bicluster: 
bicluster_0074
Width: 
21
Number of Sites: 
1
Consensus: 
gCGGCgGCGGcGGCagTGGCG
 0.15
bicluster_0185
motif_0185_1

motif_0185_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000027
Motif Bicluster: 
bicluster_0185
Width: 
21
Number of Sites: 
1
Consensus: 
GCGGCGGCggCagcGGCgGcg
motif_0185_2

motif_0185_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.048
Motif Bicluster: 
bicluster_0185
Width: 
24
Number of Sites: 
1
Consensus: 
atTGCATtGgGntCgagttacTTg
 0.13

GO Terms

GO:0015979 GO:0009523 GO:0009654 GO:0042651 -

photosynthesis

GO Category: 
biological_process
Details: 
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.

photosystem II

GO Category: 
cellular_component
Details: 
A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.

oxygen evolving complex

GO Category: 
cellular_component
Details: 
A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).

thylakoid membrane

GO Category: 
cellular_component
Details: 
The pigmented membrane of any thylakoid.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI98021

Add comment

Log in to post comments