Cre06.g264300.t1.2 S15/NS1, RNA-binding protein

Chromosome Product Feature Type Transcript Start End Strand Length
Cre06.g264300.t1.2 chromosome_6 S15/NS1, RNA-binding protein CDS 2021808 2023915 - 2 107
Locus Genomic View Functional Annotation
Cre06.g264300.t1.2 Cre06.g264300.t1.2

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Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g5938.t1, Cre06.g264300.t1.1 JGI195628 30780052 Search
Motif 1 Motif 2 Residual
bicluster_0205

motif_0205_1

e.value: 
27
Motif Bicluster: 
Width: 
24
Number of Sites: 
1
Consensus: 
TtGtAgnTaccagaaCtAaCTaaa

motif_0205_2

e.value: 
110
Motif Bicluster: 
Width: 
21
Number of Sites: 
1
Consensus: 
TantTttcAtTnttaTGtcAT
0.07
bicluster_0208

motif_0208_1

e.value: 
9900
Motif Bicluster: 
Width: 
15
Number of Sites: 
1
Consensus: 
CACGTcCaCGTCctC

motif_0208_2

e.value: 
40000
Motif Bicluster: 
Width: 
15
Number of Sites: 
1
Consensus: 
TGTTAATaTtTAATT
0.07
GO:0003735 GO:0006412 GO:0005622 GO:0005840 -

structural constituent of ribosome

GO Category: 
molecular_function
Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.

translation

GO Category: 
biological_process
Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

intracellular

GO Category: 
cellular_component
Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

ribosome

GO Category: 
cellular_component
Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences
Link to STRING STRING Network
JGI195628
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