Cre06.g279150.t1.2 Class II aminoacyl-tRNA and biotin synthetases superfamily protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre06.g279150.t1.2 chromosome_6 Class II aminoacyl-tRNA and biotin synthetases superfamily protein CDS 4888632 4894688 + 6 056

Phytozome

Locus Genomic View Functional Annotation
Cre06.g279150.t1.2 Cre06.g279150.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
TSD2 g6490.t1, Cre06.g279150.t1.1 JGI191617 30780105 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0178
motif_0178_1

motif_0178_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
15
Motif Bicluster: 
bicluster_0178
Width: 
15
Number of Sites: 
1
Consensus: 
GTGaGtGtAtgTGtt
motif_0178_2

motif_0178_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
49
Motif Bicluster: 
bicluster_0178
Width: 
15
Number of Sites: 
1
Consensus: 
GTGaTGGTggtGaTG
 0.10
bicluster_0203
motif_0203_1

motif_0203_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
530
Motif Bicluster: 
bicluster_0203
Width: 
15
Number of Sites: 
1
Consensus: 
GATTAnATTaAatGG
motif_0203_2

motif_0203_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
110
Motif Bicluster: 
bicluster_0203
Width: 
24
Number of Sites: 
1
Consensus: 
agnnttaTctttnTgTgTtCAant
 0.11

GO Terms

GO:0000166 GO:0004812 GO:0005524 GO:0006418 GO:0003676 -

nucleotide binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

aminoacyl-tRNA ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

tRNA aminoacylation for protein translation

GO Category: 
biological_process
Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.

nucleic acid binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any nucleic acid.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI191617

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