Cre10.g428750.t1.1 RNA binding;RNA binding

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre10.g428750.t1.1 chromosome_10 RNA binding;RNA binding CDS 1490371 1506382 + 16 011

Phytozome

Locus Genomic View Functional Annotation
Cre10.g428750.t1.1 Cre10.g428750.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g10592.t1 Not available 30790321 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0126
motif_0126_1

motif_0126_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.001
Motif Bicluster: 
bicluster_0126
Width: 
21
Number of Sites: 
1
Consensus: 
CGcTgCcGccgcTGCtgCTGc
motif_0126_2

motif_0126_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
11000
Motif Bicluster: 
bicluster_0126
Width: 
24
Number of Sites: 
1
Consensus: 
TTgTgCTcAAatCATttggaTATT
 0.10
bicluster_0157
motif_0157_1

motif_0157_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.72
Motif Bicluster: 
bicluster_0157
Width: 
24
Number of Sites: 
1
Consensus: 
TagTTCCntTtgCtTTttGttttt
motif_0157_2

motif_0157_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
20
Motif Bicluster: 
bicluster_0157
Width: 
24
Number of Sites: 
1
Consensus: 
CAgCgGcAGCAcCAGCagCAGCAG
 0.10

GO Terms

GO:0003723 GO:0006397 GO:0005634 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

mRNA processing

GO Category: 
biological_process
Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

nucleus

GO Category: 
cellular_component
Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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