Cre10.g429150.t1.2 tryptophan biosynthesis 1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre10.g429150.t1.2 chromosome_10 tryptophan biosynthesis 1 CDS 1558282 1563331 + 5 049

Phytozome

Locus Genomic View Functional Annotation
Cre10.g429150.t1.2 Cre10.g429150.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
PRT1 g10602.t1, Cre10.g429150.t1.1 JGI126030 30790910 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0038
motif_0038_1

motif_0038_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00072
Motif Bicluster: 
bicluster_0038
Width: 
21
Number of Sites: 
1
Consensus: 
TTtGgTTTaGTtTGGGCTGGT
motif_0038_2

motif_0038_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00032
Motif Bicluster: 
bicluster_0038
Width: 
18
Number of Sites: 
1
Consensus: 
CgCtGCcGCtGCcGCcGC
 0.17
bicluster_0135
motif_0135_1

motif_0135_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
140
Motif Bicluster: 
bicluster_0135
Width: 
21
Number of Sites: 
1
Consensus: 
AaACaagAAAtGggCAAgaCa
motif_0135_2

motif_0135_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
390
Motif Bicluster: 
bicluster_0135
Width: 
11
Number of Sites: 
1
Consensus: 
AAtaTGCAGaC
 0.09

GO Terms

GO:0016757 GO:0008152 -

transferase activity, transferring glycosyl groups

GO Category: 
molecular_function
Details: 
Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).

metabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI126030

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