Cre10.g467100.t1.1 nuclear assembly factor 1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre10.g467100.t1.1 chromosome_10 nuclear assembly factor 1 CDS 6543375 6547392 - 4 017

Phytozome

Locus Genomic View Functional Annotation
Cre10.g467100.t1.1 Cre10.g467100.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g11446.t1 Not available 30790916 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0152
motif_0152_1

motif_0152_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0012
Motif Bicluster: 
bicluster_0152
Width: 
24
Number of Sites: 
1
Consensus: 
CTgCgGCtgCTGctgCTGcnGCTG
motif_0152_2

motif_0152_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1500
Motif Bicluster: 
bicluster_0152
Width: 
11
Number of Sites: 
1
Consensus: 
TTGCAAatgCa
 0.15
bicluster_0177
motif_0177_1

motif_0177_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.015
Motif Bicluster: 
bicluster_0177
Width: 
15
Number of Sites: 
1
Consensus: 
TCAtgcacaCaTGCa
motif_0177_2

motif_0177_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
6.9
Motif Bicluster: 
bicluster_0177
Width: 
24
Number of Sites: 
1
Consensus: 
CtCCcnCtctcCctcCgCnCacCc
 0.22

GO Terms

GO:0001522 GO:0042254 -

pseudouridine synthesis

GO Category: 
biological_process
Details: 
The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.

ribosome biogenesis

GO Category: 
biological_process
Details: 
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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