Cre11.g480800.t1.2 PIN domain-like family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre11.g480800.t1.2 chromosome_11 PIN domain-like family protein CDS 3417721 3421612 + 3 891

Phytozome

Locus Genomic View Functional Annotation
Cre11.g480800.t1.2 Cre11.g480800.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g11936.t1, Cre11.g480800.t1.1 JGI394278 30775800 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0131
motif_0131_1

motif_0131_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
3600
Motif Bicluster: 
bicluster_0131
Width: 
15
Number of Sites: 
1
Consensus: 
taTtTAtATtACaAt
motif_0131_2

motif_0131_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1100
Motif Bicluster: 
bicluster_0131
Width: 
15
Number of Sites: 
1
Consensus: 
ACATTgcAaTgCtTA
 0.12
bicluster_0180
motif_0180_1

motif_0180_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
110
Motif Bicluster: 
bicluster_0180
Width: 
24
Number of Sites: 
1
Consensus: 
GcTncTGGtgnTGCcgGTgcnGnt
motif_0180_2

motif_0180_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1900
Motif Bicluster: 
bicluster_0180
Width: 
21
Number of Sites: 
1
Consensus: 
TGcATtgagAcaCgCAcACAC
 0.18

GO Terms

GO:0032040 -

small-subunit processome

GO Category: 
cellular_component
Details: 
A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI394278

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