Cre12.g484200.t1.2 geranylgeranyl pyrophosphate synthase 1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g484200.t1.2 chromosome_12 geranylgeranyl pyrophosphate synthase 1 CDS 108576 112293 + 3 717

Phytozome

Locus Genomic View Functional Annotation
Cre12.g484200.t1.2 Cre12.g484200.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
GGPS1, PPS2 g12018.t1, Cre12.g484200.t1.1 JGI195038 30791982 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0070
motif_0070_1

motif_0070_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000057
Motif Bicluster: 
bicluster_0070
Width: 
24
Number of Sites: 
1
Consensus: 
CGCCagCacCgCCtCCaCCtccaC
motif_0070_2

motif_0070_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
76
Motif Bicluster: 
bicluster_0070
Width: 
15
Number of Sites: 
1
Consensus: 
cAAnTGaanAanAaA
 0.14
bicluster_0178
motif_0178_1

motif_0178_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
15
Motif Bicluster: 
bicluster_0178
Width: 
15
Number of Sites: 
1
Consensus: 
GTGaGtGtAtgTGtt
motif_0178_2

motif_0178_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
49
Motif Bicluster: 
bicluster_0178
Width: 
15
Number of Sites: 
1
Consensus: 
GTGaTGGTggtGaTG
 0.10

GO Terms

GO:0008299 -

isoprenoid biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI195038

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