Cre12.g490350.t1.1 4-hydroxy-3-methylbut-2-enyl diphosphate synthase

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g490350.t1.1 chromosome_12 4-hydroxy-3-methylbut-2-enyl diphosphate synthase CDS 1119098 1126807 - 7 709

Phytozome

Locus Genomic View Functional Annotation
Cre12.g490350.t1.1 Cre12.g490350.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
HDS1 g12178.t1 JGI55268 30792879 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0008
motif_0008_1

motif_0008_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000042
Motif Bicluster: 
bicluster_0008
Width: 
15
Number of Sites: 
1
Consensus: 
CACatGCAaACAngC
motif_0008_2

motif_0008_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000021
Motif Bicluster: 
bicluster_0008
Width: 
21
Number of Sites: 
1
Consensus: 
gctGccgcTGCTaCtGCCgCn
 0.13
bicluster_0142
motif_0142_1

motif_0142_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
19
Motif Bicluster: 
bicluster_0142
Width: 
14
Number of Sites: 
1
Consensus: 
CaTaCAcACatGCA
motif_0142_2

motif_0142_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2300
Motif Bicluster: 
bicluster_0142
Width: 
15
Number of Sites: 
1
Consensus: 
AgCTGCATTTTgAcT
 0.11

GO Terms

GO:0046429 GO:0016114 GO:0055114 -

4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate + H2O + 2 oxidized ferredoxin = 2-C-methyl-D-erythritol 2,4-cyclodiphosphate + 2 reduced ferredoxin.

terpenoid biosynthetic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.

oxidation-reduction process

GO Category: 
biological_process
Details: 
A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI55268

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