Cre12.g512100.t1.1 PIF1-related DNA helicase

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g512100.t1.1 chromosome_12 PIF1-related DNA helicase CDS 1798037 1804198 - 6 161

Phytozome

Locus Genomic View Functional Annotation
Cre12.g512100.t1.1 Cre12.g512100.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
PIF1 g12305.t1 Not available 30793532 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0137
motif_0137_1

motif_0137_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000019
Motif Bicluster: 
bicluster_0137
Width: 
21
Number of Sites: 
1
Consensus: 
AGcagcAGcaaCAGcngnggc
motif_0137_2

motif_0137_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
Motif Bicluster: 
bicluster_0137
Width: 
0
Number of Sites: 
1
 0.28
bicluster_0204
motif_0204_1

motif_0204_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
0.000000031
Motif Bicluster: 
bicluster_0204
Width: 
24
Number of Sites: 
1
Consensus: 
CnGCCgCtGctnCtGCctCtGCcg
motif_0204_2

motif_0204_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:17
e.value: 
21
Motif Bicluster: 
bicluster_0204
Width: 
21
Number of Sites: 
1
Consensus: 
AaTAaaaTgTaTTcaaAaAnT
 0.23

GO Terms

GO:0003678 GO:0000723 GO:0006281 -

DNA helicase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.

telomere maintenance

GO Category: 
biological_process
Details: 
Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences.

DNA repair

GO Category: 
biological_process
Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network

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