Cre12.g542800.t1.2 nuclear RNA polymerase C2

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g542800.t1.2 chromosome_12 nuclear RNA polymerase C2 CDS 9089220 9101435 - 12 215

Phytozome

Locus Genomic View Functional Annotation
Cre12.g542800.t1.2 Cre12.g542800.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
RPC2 g13713.t1, Cre12.g542800.t1.1 JGI129857 30792751 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0128
motif_0128_1

motif_0128_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
820
Motif Bicluster: 
bicluster_0128
Width: 
11
Number of Sites: 
1
Consensus: 
AAGAagAaAaA
motif_0128_2

motif_0128_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
66000
Motif Bicluster: 
bicluster_0128
Width: 
24
Number of Sites: 
1
Consensus: 
CCGctnCtGcTGcTGcTGCTGCnA
 0.13
bicluster_0194
motif_0194_1

motif_0194_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
4.2
Motif Bicluster: 
bicluster_0194
Width: 
24
Number of Sites: 
1
Consensus: 
CTGCtGgTGgTGCTGtTGCTGCTG
motif_0194_2

motif_0194_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
170
Motif Bicluster: 
bicluster_0194
Width: 
11
Number of Sites: 
1
Consensus: 
gaGCAACAAAA
 0.14

GO Terms

GO:0003677 GO:0003899 GO:0006351 -

DNA binding

GO Category: 
molecular_function
Details: 
Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid).

DNA-directed RNA polymerase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

transcription, DNA-dependent

GO Category: 
biological_process
Details: 
The cellular synthesis of RNA on a template of DNA.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI129857

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