Cre12.g550850.t1.2 photosystem II subunit P-1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre12.g550850.t1.2 chromosome_12 photosystem II subunit P-1 CDS 8183096 8185589 + 2 493

Phytozome

Locus Genomic View Functional Annotation
Cre12.g550850.t1.2 Cre12.g550850.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g13528.t1, Cre12.g550850.t1.1 JGI33411 30791734 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0062
motif_0062_1

motif_0062_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.8
Motif Bicluster: 
bicluster_0062
Width: 
23
Number of Sites: 
1
Consensus: 
gCTgCtGttgctGCTGtcaCTGc
motif_0062_2

motif_0062_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
11000
Motif Bicluster: 
bicluster_0062
Width: 
11
Number of Sites: 
1
Consensus: 
ATGGGTGTTGc
 0.07
bicluster_0185
motif_0185_1

motif_0185_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000027
Motif Bicluster: 
bicluster_0185
Width: 
21
Number of Sites: 
1
Consensus: 
GCGGCGGCggCagcGGCgGcg
motif_0185_2

motif_0185_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.048
Motif Bicluster: 
bicluster_0185
Width: 
24
Number of Sites: 
1
Consensus: 
atTGCATtGgGntCgagttacTTg
 0.13

GO Terms

GO:0005509 GO:0015979 GO:0009523 GO:0009654 GO:0019898 -

calcium ion binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).

photosynthesis

GO Category: 
biological_process
Details: 
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.

photosystem II

GO Category: 
cellular_component
Details: 
A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.

oxygen evolving complex

GO Category: 
cellular_component
Details: 
A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).

extrinsic to membrane

GO Category: 
cellular_component
Details: 
Loosely bound to one surface of a membrane, but not integrated into the hydrophobic region.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI33411

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