Cre13.g567850.t1.2 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre13.g567850.t1.2 chromosome_13 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein CDS 912097 914554 + 2 457

Phytozome

Locus Genomic View Functional Annotation
Cre13.g567850.t1.2 Cre13.g567850.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g13973.t1, Cre13.g567850.t1.1 JGI380632 30784649 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0127
motif_0127_1

motif_0127_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
8
Motif Bicluster: 
bicluster_0127
Width: 
24
Number of Sites: 
1
Consensus: 
CcAcCAgcgccGCCATCagcngcc
motif_0127_2

motif_0127_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
18
Motif Bicluster: 
bicluster_0127
Width: 
24
Number of Sites: 
1
Consensus: 
TTACatTcaTGatTAgcTaAGGaA
 0.16
bicluster_0197
motif_0197_1

motif_0197_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0000015
Motif Bicluster: 
bicluster_0197
Width: 
21
Number of Sites: 
1
Consensus: 
aacatAcAATataagAAanaa
motif_0197_2

motif_0197_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.32
Motif Bicluster: 
bicluster_0197
Width: 
15
Number of Sites: 
1
Consensus: 
GttgTTGntggCATG
 0.23

GO Terms

GO:0001522 GO:0042254 -

pseudouridine synthesis

GO Category: 
biological_process
Details: 
The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.

ribosome biogenesis

GO Category: 
biological_process
Details: 
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI380632

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