Cre13.g573000.t1.2 SET domain-containing protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre13.g573000.t1.2 chromosome_13 SET domain-containing protein CDS 1551815 1557489 - 5 674

Phytozome

Locus Genomic View Functional Annotation
Cre13.g573000.t1.2 Cre13.g573000.t1.2

Help

Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g14090.t1, Cre13.g573000.t1.1 JGI168563 30784616 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0106
motif_0106_1

motif_0106_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0013
Motif Bicluster: 
bicluster_0106
Width: 
24
Number of Sites: 
1
Consensus: 
TGcTGctGGcGcTGctGcTgnTgc
motif_0106_2

motif_0106_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.01
Motif Bicluster: 
bicluster_0106
Width: 
24
Number of Sites: 
1
Consensus: 
aATnAnttAcntcAaaatATnaac
 0.21
bicluster_0153
motif_0153_1

motif_0153_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000012
Motif Bicluster: 
bicluster_0153
Width: 
15
Number of Sites: 
1
Consensus: 
ACaCaCAnACACaCA
motif_0153_2

motif_0153_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
150
Motif Bicluster: 
bicluster_0153
Width: 
24
Number of Sites: 
1
Consensus: 
AACAAAGaaTcacctcagaCAtcA
 0.19

GO Terms

GO:0005515 -

protein binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

Interaction Target Module Weight
up-regulates bicluster_0040 0.05
down-regulates bicluster_0113 0.06
up-regulates bicluster_0127 0.05
up-regulates bicluster_0162 0.06
up-regulates bicluster_0197 0.06

String Network

Link to STRING STRING Network
JGI168563

Add comment

Log in to post comments