Cre13.g603900.t1.2 tRNA synthetase beta subunit family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre13.g603900.t1.2 chromosome_13 tRNA synthetase beta subunit family protein CDS 4573421 4585154 - 11 733

Phytozome

Locus Genomic View Functional Annotation
Cre13.g603900.t1.2 Cre13.g603900.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
TSF1 g14572.t1, Cre13.g603900.t1.1 JGI286861 30783937 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0023
motif_0023_1

motif_0023_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.00000000034
Motif Bicluster: 
bicluster_0023
Width: 
21
Number of Sites: 
1
Consensus: 
gAGCTgcgGaAGgAGCAGcAG
motif_0023_2

motif_0023_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000021
Motif Bicluster: 
bicluster_0023
Width: 
24
Number of Sites: 
1
Consensus: 
TaTcTTaAtgtcTccaGAnantAA
 0.10
bicluster_0105
motif_0105_1

motif_0105_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000014
Motif Bicluster: 
bicluster_0105
Width: 
21
Number of Sites: 
1
Consensus: 
CagCaGcAGCTGcTGgTGCaG
motif_0105_2

motif_0105_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
82
Motif Bicluster: 
bicluster_0105
Width: 
21
Number of Sites: 
1
Consensus: 
TcTtcatcatcacCTtcangT
 0.21

GO Terms

GO:0003723 GO:0004826 GO:0000287 GO:0005524 GO:0006432 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

phenylalanine-tRNA ligase activity

GO Category: 
molecular_function
Details: 
Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe).

magnesium ion binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with magnesium (Mg) ions.

ATP binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

phenylalanyl-tRNA aminoacylation

GO Category: 
biological_process
Details: 
The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI286861

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