Cre14.g627950.t1.2 3-oxo-5-alpha-steroid 4-dehydrogenase family protein

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre14.g627950.t1.2 chromosome_14 3-oxo-5-alpha-steroid 4-dehydrogenase family protein CDS 2984671 2988306 - 3 635

Phytozome

Locus Genomic View Functional Annotation
Cre14.g627950.t1.2 Cre14.g627950.t1.2

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
SRD2 g15128.t1, Cre14.g627950.t1.1 JGI117574 30776756 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0009
motif_0009_1

motif_0009_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1.8
Motif Bicluster: 
bicluster_0009
Width: 
24
Number of Sites: 
1
Consensus: 
tGGaggcgGcGGcggtGgaGgcGG
motif_0009_2

motif_0009_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
1300
Motif Bicluster: 
bicluster_0009
Width: 
8
Number of Sites: 
1
Consensus: 
AAATggAA
 0.33
bicluster_0039
motif_0039_1

motif_0039_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
2.4e-24
Motif Bicluster: 
bicluster_0039
Width: 
21
Number of Sites: 
1
Consensus: 
CTGCaGCTGCtgCtnCTGCTg
motif_0039_2

motif_0039_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000000000022
Motif Bicluster: 
bicluster_0039
Width: 
24
Number of Sites: 
1
Consensus: 
aGGcGgAgGtGgAgGaGGaGGnGG
 0.24

GO Terms

GO:0016627 GO:0006629 GO:0005737 GO:0016021 -

oxidoreductase activity, acting on the CH-CH group of donors

GO Category: 
molecular_function
Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.

lipid metabolic process

GO Category: 
biological_process
Details: 
The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.

cytoplasm

GO Category: 
cellular_component
Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

integral to membrane

GO Category: 
cellular_component
Details: 
Penetrating at least one phospholipid bilayer of a membrane. May also refer to the state of being buried in the bilayer with no exposure outside the bilayer. When used to describe a protein, indicates that all or part of the peptide sequence is embedded in the membrane.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

String Network

Link to STRING STRING Network
JGI117574

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