Cre16.g659950.t1.1 Ribosomal protein S5 family protein

Chromosome Product Feature Type Transcript Start End Strand Length
Cre16.g659950.t1.1 chromosome_16 Ribosomal protein S5 family protein CDS 2370909 2375432 + 4 523
Locus Genomic View Functional Annotation
Cre16.g659950.t1.1 Cre16.g659950.t1.1

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Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g15941.t1 JGI131752 30778100 Search
Motif 1 Motif 2 Residual
bicluster_0202

motif_0202_1

e.value: 
330
Motif Bicluster: 
Width: 
20
Number of Sites: 
1
Consensus: 
ATGGTAAAcatnTtaGTATT

motif_0202_2

e.value: 
500
Motif Bicluster: 
Width: 
15
Number of Sites: 
1
Consensus: 
ATGAtGTaGTTgctG
0.05
bicluster_0208

motif_0208_1

e.value: 
9900
Motif Bicluster: 
Width: 
15
Number of Sites: 
1
Consensus: 
CACGTcCaCGTCctC

motif_0208_2

e.value: 
40000
Motif Bicluster: 
Width: 
15
Number of Sites: 
1
Consensus: 
TGTTAATaTtTAATT
0.07
GO:0003723 GO:0003735 GO:0006412 GO:0005840 -

RNA binding

GO Category: 
molecular_function
Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

structural constituent of ribosome

GO Category: 
molecular_function
Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.

translation

GO Category: 
biological_process
Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

ribosome

GO Category: 
cellular_component
Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences
Link to STRING STRING Network
JGI131752
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