Cre16.g673250.t1.1 squamosa promoter binding protein-like 14, NRR1

Summary

Chromosome Product Feature Type Transcript Start End Strand Length
Cre16.g673250.t1.1 chromosome_16 squamosa promoter binding protein-like 14, NRR1 CDS 6452786 6463987 + 11 201

Phytozome

Locus Genomic View Functional Annotation
Cre16.g673250.t1.1 Cre16.g673250.t1.1

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Product Synonyms

Symbol Augustus Synonyms STRING PAC Record in ChlamyCyc
g16657.t1 Not available 30777414 Search

Gene Expression

FPKM

Genome Browser

Regulatory Modules

Motif 1 Motif 2 Residual
bicluster_0164
motif_0164_1

motif_0164_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.0012
Motif Bicluster: 
bicluster_0164
Width: 
20
Number of Sites: 
1
Consensus: 
aTAAatATGnaatTcAttAA
motif_0164_2

motif_0164_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
6.9
Motif Bicluster: 
bicluster_0164
Width: 
24
Number of Sites: 
1
Consensus: 
AgttctcTcTTtTcATctngaTta
 0.14
bicluster_0184
motif_0184_1

motif_0184_1

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.000000032
Motif Bicluster: 
bicluster_0184
Width: 
21
Number of Sites: 
1
Consensus: 
TgaactattcaTgaATGTaat
motif_0184_2

motif_0184_2

Submitted by Anonymous (not verified) on Wed, 05/20/2015 - 14:16
e.value: 
0.45
Motif Bicluster: 
bicluster_0184
Width: 
21
Number of Sites: 
1
Consensus: 
ATAAAtATgtAagTcATgaAa
 0.14

GO Terms

GO:0003677 GO:0005634 -

DNA binding

GO Category: 
molecular_function
Details: 
Any molecular function by which a gene product interacts selectively with DNA (deoxyribonucleic acid).

nucleus

GO Category: 
cellular_component
Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Regulated by

Displaying 1 - 2 of 2
Regulator Locus Interaction Weight Other Influences

Regulates

Interaction Target Module Weight
up-regulates bicluster_0067 0.07
up-regulates bicluster_0082 0.06

String Network

Link to STRING STRING Network

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