Module 28 Residual: 0.58
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
| Residual | Motif 1 e-value | Motif 2 e-value | Conditions | Genes | version |
|---|---|---|---|---|---|
| 0.58 | 0.0000000000009 | 2.4 | 76 | 35 | 20160204 |
| Motif 1 |
 |
|---|---|
| e-value: 0.0000000000009 | |
| Motif 2 |
 |
| e-value: 2.4 |
| MSMEG_6710 Esterase (Hydrolase, alpha/beta fold family protein) | MSMEG_5013 Uncharacterized protein |
| MSMEG_4350 Dihydrodipicolinate reductase (EC 1.17.1.8) | MSMEG_5011 Uncharacterized protein |
| MSMEG_3284 Transcriptional regulator, MarR family protein | MSMEG_0875 MFS family sialic acid transporter (Putative sialic acid transporter) |
| MSMEG_5770 Uncharacterized protein | MSMEG_5560 Uncharacterized protein |
| MSMEG_5320 Uncharacterized protein | MSMEG_0931 Uncharacterized protein |
| MSMEG_6442 Integral membrane protein | MSMEG_5706 DNA or RNA helicase of superfamily protein II |
| MSMEG_5225 Uncharacterized protein | MSMEG_6513 Major facilitator superfamily MFS_1 (Membrane transport protein) |
| MSMEG_5224 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2) | MSMEG_3574 TPR domain protein |
| MSMEG_3011 Cyclohexanone 1,2-monooxygenase (EC 1.14.13.22) (Steroid monooxygenase) | MSMEG_2204 Carveol dehydrogenase ((+)-trans-carveol dehydrogenase) (EC 1.1.1.275) (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.275) |
| MSMEG_6132 Glucarate dehydratase (Mandelate racemase/muconate lactonizing enzyme) (EC 4.2.1.40) | MSMEG_3369 Major facilitator superfamily MFS_1 (Putative transport protein) |
| MSMEG_6133 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (Putative 5-dehydro-4-deoxyglucarate dehydratase 1) | MSMEG_1817 Conserved transmembrane protein (Probable conserved transmembrane protein) |
| MSMEG_5835 KsdD-like steroid dehydrogenase MSMEG_5835 (EC 1.3.99.-) | MSMEG_6572 Methyltransferase |
| MSMEG_2498 Uncharacterized protein | MSMEG_0892 Conserved secreted protein (Uncharacterized protein) |
| MSMEG_3098 Uncharacterized protein | MSMEG_2427 Bifunctional uridylyltransferase/uridylyl-removing enzyme (UTase/UR) (Bifunctional [protein-PII] modification enzyme) (Bifunctional nitrogen sensor protein) |
| MSMEG_5696 'Cold-shock' DNA-binding domain protein | MSMEG_0042 TetR-family protein transcriptional regulator (TetR-family transcriptional regulator) |
| MSMEG_5697 Conserved integral membrane protein (Integral membrane protein) | MSMEG_3588 Uncharacterized protein |
| MSMEG_5535 Uncharacterized protein | MSMEG_3938 Uncharacterized protein |
| MSMEG_5019 Regulatory protein |
KO_stationary.phase_rep2
WT.vs..DglnR.N_starvation_rep2
WT.vs..DamtR.without.N_rep1
Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.
WT.vs..DamtR.without.N_rep2
Biological.replicate.4.of.6..negative.control
dosR.WT_Replicate4
WT.with.vs..without.N_dye.swap_rep1
MB100pruR.vs..MB100..rep.3
dosR.WT_Replicate2
KO_log.phase_rep1
Biological.replicate.7.of.7..falcarinol.treatment
Wild.type.rep1.y
DglnR_without.vs..with.N_rep2
Biological.replicate.3.of.7..panaxydol.treatment
WT.vs..DamtR.without.N_.dyeswap_rep1
Biological.replicate.2.of.7..panaxydol.treatment
Biological.replicate.1.of.6..kanamycin.treatment
Biological.replicate.1.of.6..isoniazid.treatment
Biological.replicate.7.of.7..ethambutol.treatment
Biological.replicate.1.of.7..ethambutol.treatment
Biological.replicate.6.of.6..kanamycin.treatment
rel.knockout.rep2
rel.knockout.rep1
Bedaquiline.vs..DMSO..45min
Biological.replicate.4.of.6..isoniazid.treatment
Biological.replicate.3.of.6..isoniazid.treatment
DamtR.with.vs..DamtR.without.N_.rep2
Sub.MIC.INH
X0.6..vs..50..air.saturation.Replicate.4
Biological.replicate.2.of.7..falcarinol.treatment
mc2155.vs.Dcrp1.replicate.2
Biological.replicate.5.of.6..kanamycin.treatment
Biological.replicate.1.of.7..panaxydol.treatment
WT.vs..DamtR.N.surplus_rep2
dcpA.knockout.rep2
dcpA.knockout.rep1
Biological.replicate.2.of.6..isoniazid.treatment
Plogcy5plogcy3slide111norm
stphcy5plogcy3slide580norm
Biological.replicate.3.of.6..kanamycin.treatment
X2.5..vs..50..air.saturation.Replicate.5
Biological.replicate.2.of.7..ethambutol.treatment
WT_log.phase_rep1
DglnR_without.vs..with.N_rep1
WT.with.vs..without.N_dye.swap_rep2
WT_stationary.phase_rep2
WT_stationary.phase_rep1
Biological.replicate.6.of.6..isoniazid.treatment
X4XR.rep2
Biological.replicate.5.of.7..ethambutol.treatment
Slow.vs..Fast.Replicate.5
Biological.replicate.5.of.6..isoniazid.treatment
Slow.vs..Fast.Replicate.1
Biological.replicate.6.of.7..ethambutol.treatment
Biological.replicate.3.of.7..falcarinol.treatment
BatchCulture_LBTbroth_ExponentialPhase_Replicate3
X3dbfcy5plogcy3slide603norm
BatchCulture_LBTbroth_ExponentialPhase_Replicate1
mc2155.pMind..vs.mc2155.pMind.6189.replicate.2
mc2155.pMind..vs.mc2155.pMind.6189.replicate.3
WT.vs..DamtR.N.surplus_dyeswap_rep2
WT.with.vs..without.N_rep2
Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.
WT.with.vs..without.N_rep1
DglnR_without.vs..with.N_dyeswap_rep2
DglnR_without.vs..with.N_dyeswap_rep1
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1
Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.
JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2
BatchCulture_LBTbroth_StationaryPhase_Replicate3
BatchCulture_LBTbroth_StationaryPhase_Replicate1
Biological.replicate.2.of.6..negative.control
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2
M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1
Biological.replicate.3.of.6..negative.control
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