Module 51 Residual: 0.57Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.57	0.000000044	29000	75	24	20160204

Motifs

Motif 1
	e-value: 0.000000044
Motif 2
	e-value: 29000

Module Plots

Members

MSMEG_4606 Uncharacterized protein	MSMEG_1082 Putative response regulator
MSMEG_5551 Stas domain protein	MSMEG_3308 Universal stress protein UspA (Universal stress protein family protein, putative)
MSMEG_5447 Dolichyl-phosphate-mannose--protein O-mannosyl transferase (Dolichyl-phosphate-mannose-protein mannosyltransferase)	MSMEG_5742 Acyltransferase domain protein
MSMEG_1629 Uncharacterized protein	MSMEG_5743 Patatin
MSMEG_2126 Uncharacterized protein	MSMEG_0910 Uncharacterized protein
MSMEG_1805 Uncharacterized protein	MSMEG_3367 Short-chain dehydrogenase/reductase SDR (EC 1.1.1.100)
MSMEG_5817 Uncharacterized protein	MSMEG_0912 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) (3-hydroxybutyryl-CoA dehydrogenase FadB2) (EC 1.1.1.-)
MSMEG_1684 Uncharacterized protein	MSMEG_1566 Oxidoreductase
MSMEG_5818 MCE-family protein MCE1a (Virulence factor Mce family protein)	MSMEG_2076 GrpB domain protein (Uncharacterized protein)
MSMEG_1263 Uncharacterized protein	MSMEG_3608 Acetyl-CoA acetyltransferase
MSMEG_3619 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.-)	MSMEG_4318 Uncharacterized protein
MSMEG_3597 Uncharacterized protein	MSMEG_3832 4-hydroxyacetophenone monooxygenase (Cyclohexanone monooxygenase) (EC 1.14.13.22)

Conditions

KO_stationary.phase_rep2

WT.vs..DamtR.without.N_rep1

Wild.type.rep2.y

Bedaquiline.vs..DMSO.15min

Biological.replicate.2.of.6..isoniazid.treatment

Biological.replicate.2.of.7..falcarinol.treatment

MB100pruR.vs..MB100..rep.3

Biological.replicate.5.of.6..negative.control

KO_log.phase_rep2

KO_log.phase_rep1

Wild.type.rep3

Wild.type.rep1.x

Wild.type.rep1.y

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

Biological.replicate.6.of.6..negative.control

WT.vs..DamtR.without.N_.dyeswap_rep1

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Bedaquiline.vs..DMSO.60min

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

rel.knockout.rep2

rel.knockout.rep1

Biological.replicate.1.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..panaxydol.treatment

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.4.of.6..isoniazid.treatment

DamtR.with.vs..DamtR.without.N_.rep2

X0.6..vs..50..air.saturation.Replicate.1

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

mc2155.vs.Dcrp1.replicate.2

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

mc2155.vs.Dcrp1.replicate.1

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

mc2155.vs.Dcrp1.replicate.4

WT.vs..DamtR.N.surplus_rep2

WT.vs..DamtR.N.surplus_rep1

Plogcy5plogcy3slide111norm

stphcy5plogcy3slide580norm

X3dbfcy5plogcy3slide601norm

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

Biological.replicate.2.of.7..ethambutol.treatment

X4dbfcy5plogcy3slide480norm

DamtR.with.vs..DamtR.without.N_dyeswap_.rep1

X2.5..vs..50..air.saturation.Replicate.1

Biological.replicate.2.of.6..kanamycin.treatment

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

X4XR.rep1

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Slow.vs..Fast.Replicate.5

X2.5..vs..50..air.saturation.Replicate.3

Biological.replicate.5.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Biological.replicate.6.of.7..ethambutol.treatment

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

dosR.WT_Replicate3

X3dbfcy5plogcy3slide603norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.3

X4dbfcy5plogcy3slide901norm

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Log.phase.cultures.without.induction.of.I.SceI.expression..T.0...Atc.

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep2

Biological.replicate.2.of.6..negative.control

Comments