Module 222 Residual: 0.54Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.54	0.0000000016	2100	79	32	20160204

Motifs

Motif 1
	e-value: 0.0000000016
Motif 2
	e-value: 2100

Module Plots

Members

MSMEG_5227 Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit)	MSMEG_4577 DegV family protein
MSMEG_5226 Exodeoxyribonuclease 7 large subunit (EC 3.1.11.6)	MSMEG_3124 FeS assembly ATPase SufC
MSMEG_4296 Protease (Tripeptidyl-peptidase B Serine peptidase MEROPS family S33)	MSMEG_3125 Cysteine desulfurase (EC 2.8.1.7)
MSMEG_4817 6-phosphogluconate dehydrogenase NAD-binding protein (EC 1.1.1.-) (6-phosphogluconate dehydrogenase, NAD-binding)	MSMEG_3126 SUF system FeS assembly protein (SUF system FeS assembly protein, NifU family protein)
MSMEG_4813 Conserved domain protein (Ferredoxin)	MSMEG_3127 Conserved protein, DUF59 (Putative metal-sulfur cluster biosynthetic enzyme)
MSMEG_4812 Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit (EC 1.6.99.5)	MSMEG_3121 DNA-binding protein
MSMEG_4581 Probable nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) (Deamido-NAD(+) diphosphorylase) (Deamido-NAD(+) pyrophosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase)	MSMEG_3122 FeS assembly protein SufB
MSMEG_4580 Ribosomal silencing factor RsfS	MSMEG_3123 FeS assembly protein SufD
MSMEG_5791 Uncharacterized protein	MSMEG_5787 Uncharacterized protein
MSMEG_5793 Uncharacterized protein	MSMEG_2931 Threonine--tRNA ligase (EC 6.1.1.3) (Threonyl-tRNA synthetase) (ThrRS)
MSMEG_5792 UPF0678 fatty acid-binding protein-like protein MSMEG_5792/MSMEI_5639	MSMEG_2932 HIT family protein hydrolase (Histidine triad (HIT) protein)
MSMEG_4187 Uncharacterized protein	MSMEG_2933 Phosphatidylinositol synthase (Putative pi synthase Pgsa1 (Phosphatidylinositol synthase) (Cdp-diacylglycerol--inositol3-phosphatidyltransferase)) (EC 2.7.8.-)
MSMEG_5031 Uracil-DNA glycosylase superfamily protein	MSMEG_2934 Phosphatidylinositol mannoside acyltransferase (PIM acyltransferase) (EC 2.3.1.-)
MSMEG_4188 Short chain dehydrogenase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.243)	MSMEG_2935 GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase (EC 2.4.1.57) (Alpha-mannosyltransferase) (Guanosine diphosphomannose-phosphatidyl-inositol alpha-mannosyltransferase) (Phosphatidylinositol alpha-mannosyltransferase) (PI alpha-mannosyltransferase)
MSMEG_4578 Uncharacterized protein	MSMEG_2936 Hydrolase, nudix family protein (NUDIX hydrolase)
MSMEG_4579 Phosphoglycerate mutase (EC 5.4.2.-) (Phosphoglycerate mutase family protein)	MSMEG_5029 Alkanal monooxygenase alpha chain (Luciferase-like monooxygenase)

Conditions

KO_stationary.phase_rep1

Biological.replicate.5.of.7..falcarinol.treatment

Biological.replicate.2.of.7..panaxydol.treatment

dcpA.knockout.rep2

Biological.replicate.4.of.6..negative.control

dosR.WT_Replicate4

Biological.replicate.4.of.7..ethambutol.treatment

dosR.WT_Replicate2

dosR.WT_Replicate1

Biological.replicate.2.of.6..kanamycin.treatment

Stationary.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

Plogcy5plogcy3slide110norm

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

Biological.replicate.6.of.6..negative.control

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.6.of.6..kanamycin.treatment

Biological.replicate.3.of.6..kanamycin.treatment

Wild.type.rep3

Biological.replicate.6.of.7..falcarinol.treatment

Bedaquiline.vs..DMSO.15min

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.4.of.6..kanamycin.treatment

X0.6..vs..50..air.saturation.Replicate.1

Biological.replicate.2.of.6..negative.control

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

X0.6..vs..50..air.saturation.Replicate.4

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep3

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

mc2155.vs.Dcrp1.replicate.2

stphcy5plogcy3slide487norm

mc2155.vs.Dcrp1.replicate.1

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep4

Biological.replicate.5.of.7..panaxydol.treatment

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Plogcy5plogcy3slide111norm

Biological.replicate.5.of.6..negative.control

X3dbfcy5plogcy3slide601norm

X2.5..vs..50..air.saturation.Replicate.5

Biological.replicate.2.of.7..ethambutol.treatment

WT_log.phase_rep1

X2.5..vs..50..air.saturation.Replicate.2

X2.5..vs..50..air.saturation.Replicate.3

WT_stationary.phase_rep2

Log.phase.cultures.induced.to.express.I.SceI.for.45.minutes..T.45...ATc.

X4XR.rep2

X4XR.rep1

Tet.CarD.vs.Control..Replicates.1..2..and.3.

Slow.vs..Fast.Replicate.5

Biological.replicate.5.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Biological.replicate.6.of.7..ethambutol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Biological.replicate.5.of.6..kanamycin.treatment

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

X4dbfcy5plogcy3slide901norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.with.vs..without.N_rep2

WT.vs..DglnR.N_starvation_rep2

Wild.type.rep2.x

Biological.replicate.1.of.6..negative.control

X2XR.rep2

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep1

WT.vs..DglnR.N_starvation_rep1

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

BatchCulture_LBTbroth_StationaryPhase_Replicate2

BatchCulture_LBTbroth_StationaryPhase_Replicate3

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

Biological.replicate.3.of.6..negative.control

WT.vs..DamtR.N.surplus_rep2

Comments