Module 74 Residual: 0.50Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.50	0.000026	0.00000057	84	25	20160204

Motifs

Motif 1
	e-value: 0.000026
Motif 2
	e-value: 0.00000057

Module Plots

Members

MSMEG_5049 Multifunctional 2-oxoglutarate metabolism enzyme (2-hydroxy-3-oxoadipate synthase) (HOA synthase) (HOAS) (EC 2.2.1.5) (2-oxoglutarate carboxy-lyase) (2-oxoglutarate decarboxylase) (Alpha-ketoglutarate decarboxylase) (KG decarboxylase) (KGD) (EC 4.1.1.71) (Alpha-ketoglutarate-glyoxylate carboligase) [Includes: 2-oxoglutarate dehydrogenase E1 component (ODH E1 component) (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase E1 component) (KDH E1 component); Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) (2-oxoglutarate dehydrogenase complex E2 component) (ODH E2 component) (OGDC-E2) (Dihydrolipoamide succinyltransferase)]	MSMEG_1830 2-phospho-L-lactate transferase (EC 2.7.8.28) (LPPG:FO 2-phospho-L-lactate transferase)
MSMEG_0264 Transmembrane transport protein	MSMEG_0403 Peptidoglycolipid exporter Gap (GPLs addressing protein)
MSMEG_1827 Hydrolase, nudix family protein, putative (NUDIX hydrolase)	MSMEG_0401 Putative non-ribosomal peptide synthase
MSMEG_1829 Coenzyme F420:L-glutamate ligase (EC 6.3.2.31) (EC 6.3.2.34) (Coenzyme F420-0:L-glutamate ligase) (Coenzyme F420-1:gamma-L-glutamate ligase)	MSMEG_5009 ABC transporter
MSMEG_0402 Linear gramicidin synthetase subunit D (EC 1.-.-.-) (EC 5.1.1.-) (Non-ribosomal peptide synthetase)	MSMEG_5008 ABC transporter, ATP-binding protein (Transmembrane ATP-binding protein ABC transporter)
MSMEG_5797 Uncharacterized protein	MSMEG_0040 NIPSNAP domain containing protein (Uncharacterized protein)
MSMEG_1831 Transcriptional regulator WhiB2	MSMEG_0041 Uncharacterized protein
MSMEG_0039 Small membrane hydrophobic protein (Uncharacterized protein)	MSMEG_5005 Lipoprotein LprC (LprC protein)
MSMEG_4898 Lipoprotein lprD (Uncharacterized protein)	MSMEG_0003 DNA replication and repair protein RecF
MSMEG_3731 Dipeptidase (EC 3.4.13.19) (Dipeptidase 2)	MSMEG_5007 LprB protein
MSMEG_4205 Putative transcriptional regulator	MSMEG_0001 DNA polymerase III subunit beta (EC 2.7.7.7)
MSMEG_0002 6-phosphogluconate dehydrogenase (EC 1.1.1.44) (6-phosphogluconate dehydrogenase, decarboxylating)	MSMEG_0004 UPF0232 protein MSMEG_0004/MSMEI_0006
MSMEG_4900 Conserved membrane protein (Pks14 protein)

Conditions

Wild.type.rep2.x

WT.vs..DglnR.N_starvation_rep2

Biological.replicate.2.of.7..panaxydol.treatment

Biological.replicate.4.of.6..negative.control

WT.vs..DamtR.without.N_rep2

Mycobacterium.smegmatis.Spheroplast.induced

Plogcy5plogcy3slide110norm

Biological.replicate.4.of.7..ethambutol.treatment

Biological.replicate.1.of.6..negative.control

Biological.replicate.5.of.6..kanamycin.treatment

Tet.CarD.vs.Control..Replicates.1..2..and.3.

KO_log.phase_rep2

KO_log.phase_rep1

WT.vs..DamtR.N.surplus_dyeswap_rep2

Wild.type.rep1.x

Biological.replicate.7.of.7..falcarinol.treatment

MB100pruR.vs..MB100.rep.4

Biological.replicate.3.of.7..panaxydol.treatment

MB100pruR.vs..MB100.rep.2

WT.vs..DamtR.without.N_.dyeswap_rep2

MB100pruR.vs..MB100.rep.1

Biological.replicate.1.of.7..ethambutol.treatment

Biological.replicate.3.of.6..kanamycin.treatment

Wild.type.rep3

Biological.replicate.1.of.7..falcarinol.treatment

Biological.replicate.6.of.6..negative.control

Bedaquiline.vs..DMSO.15min

DamtR.with.vs..DamtR.without.N_.rep1

Biological.replicate.3.of.6..isoniazid.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

X0.6..vs..50..air.saturation.Replicate.1

Biological.replicate.2.of.6..kanamycin.treatment

X0.6..vs..50..air.saturation.Replicate.3

X0.6..vs..50..air.saturation.Replicate.2

X0.6..vs..50..air.saturation.Replicate.5

WT.vs..DamtR.N.surplus_rep1

dosR.WT_Replicate4

mc2155.vs.Dcrp1.replicate.3

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.7..panaxydol.treatment

mc2155.vs.Dcrp1.replicate.4

Biological.replicate.3.of.6..negative.control

X3dbfcy5plogcy3slide603norm

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Biological.replicate.2.of.7..falcarinol.treatment

Plogcy5plogcy3slide111norm

stphcy5plogcy3slide580norm

WT_log.phase_rep2

Stationary.phase.cultures.induced.to.express.I.SceI.for.15.minutes..T.15...ATc.

X3dbfcy3plogcy5slide607norm

WT_log.phase_rep1

WT.with.vs..without.N_dye.swap_rep1

X2.5..vs..50..air.saturation.Replicate.1

X2.5..vs..50..air.saturation.Replicate.2

Biological.replicate.2.of.6..negative.control

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

X4XR.rep2

Biological.replicate.2.of.7..ethambutol.treatment

Biological.replicate.5.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.4

Slow.vs..Fast.Replicate.5

Biological.replicate.5.of.6..isoniazid.treatment

Slow.vs..Fast.Replicate.1

WT.vs..DglnR.N_starvation_dye.swap_rep2

Biological.replicate.7.of.7..panaxydol.treatment

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

Biological.replicate.5.of.6..negative.control

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

BatchCulture_LBTbroth_ExponentialPhase_Replicate4

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep2

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

WT.vs..DglnR.N_starvation_rep1

BatchCulture_LBTbroth_StationaryPhase_Replicate4

BatchCulture_LBTbroth_StationaryPhase_Replicate1

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep3

Biological.replicate.4.of.6..kanamycin.treatment

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments