Module 640 Residual: 0.44Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)

Summary

Residual	Motif 1 e-value	Motif 2 e-value	Conditions	Genes	version
0.44	1.1e-17	0.00000016	77	29	20160204

Motifs

Motif 1
	e-value: 1.1e-17
Motif 2
	e-value: 0.00000016

Module Plots

Members

MSMEG_4460 Acetolactate synthase (Putative acetolactate synthase, large subunit) (EC 2.2.1.6)	MSMEG_2104 GntR-family protein transcriptional regulator (Uncharacterized protein)
MSMEG_5760 GntR-family protein regulator	MSMEG_4457 Regulatory protein, AsnC/Lrp
MSMEG_4462 Na+/solute symporter (Sodium:solute symporter)	MSMEG_5607 Uncharacterized protein
MSMEG_5050 Methionine aminopeptidase (MAP) (MetAP) (EC 3.4.11.18) (Peptidase M)	MSMEG_0655 Glucose 1-dehydrogenase, putative (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)
MSMEG_5611 Heat shock protein Hsp20 (Spore protein)	MSMEG_0654 Uncharacterized protein
MSMEG_2794 GntR family transcriptional regulator (EC 3.6.3.14) (Transcriptional regulator, GntR family protein)	MSMEG_4864 3-ketosteroid dehydrogenase (Fumarate reductase/succinate dehydrogenase flavoprotein-like protein) (EC 1.3.99.4)
MSMEG_2795 Transmembrane transport protein	MSMEG_4865 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase (EC 1.13.11.16) (3-carboxyethylcatechol 2,3-dioxygenase)
MSMEG_5973 Uncharacterized protein	MSMEG_4866 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase (3-HCI hydroxylase) (3-HPP hydroxylase) (EC 1.14.13.127) (Flavin-type monooxygenase)
MSMEG_5972 Uncharacterized protein	MSMEG_4867 2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase (Alpha/beta hydrolase fold protein)
MSMEG_6699 Uncharacterized protein	MSMEG_4861 Cyclase
MSMEG_2451 HAD-superfamily protein hydrolase, subfamily protein IIA	MSMEG_4862 3-alpha-hydroxysteroid dehydrogenase
MSMEG_5052 DNA-binding protein (Helix-turn-helix domain protein)	MSMEG_4863 Luciferase-like protein (EC 1.14.14.3) (Uncharacterized protein)
MSMEG_6705 IclR family transcriptional regulator (Regulatory protein)	MSMEG_4868 Regulatory protein, IclR (Transcriptional regulator, IclR family protein, C-domain protein)
MSMEG_4459 Agmatinase (EC 3.5.3.11)	MSMEG_3912 Acetoacetyl-CoA reductase (Short-chain dehydrogenase/reductase SDR) (EC 1.1.1.100)
MSMEG_4458 Permease for cytosine/purines uracil thiamine allantoin (Transmembrane transport protein)

Conditions

Biological.replicate.5.of.6..negative.control

WT.vs..DamtR.without.N_rep1

Biological.replicate.3.of.6..kanamycin.treatment

Biological.replicate.4.of.6..negative.control

dcpA.knockout.rep2

Mycobacterium.smegmatis.Spheroplast.induced

X4XR.rep1

Biological.replicate.3.of.7..falcarinol.treatment

dosR.WT_Replicate3

dosR.WT_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.4

Biological.replicate.2.of.6..kanamycin.treatment

Plogcy5plogcy3slide110norm

Biological.replicate.7.of.7..falcarinol.treatment

DglnR_without.vs..with.N_rep2

Biological.replicate.6.of.6..negative.control

Biological.replicate.1.of.6..kanamycin.treatment

Biological.replicate.1.of.6..isoniazid.treatment

Biological.replicate.7.of.7..ethambutol.treatment

Biological.replicate.1.of.7..ethambutol.treatment

WT.with.vs..without.N_dye.swap_rep1

rel.knockout.rep2

rel.knockout.rep1

MB100pruR.vs..MB100.rep.2

Biological.replicate.6.of.7..panaxydol.treatment

WT.vs..DamtR.without.N_rep2

Biological.replicate.4.of.6..isoniazid.treatment

Biological.replicate.3.of.6..isoniazid.treatment

X0.6..vs..50..air.saturation.Replicate.1

DglnR_without.vs..with.N_rep1

M.smegmatis_mc2_155_dMSMEG_0166_study_mutant_rep1

WT.vs..DamtR.N.surplus_rep1

Biological.replicate.4.of.6..kanamycin.treatment

stphcy5plogcy3slide487norm

Biological.replicate.5.of.6..kanamycin.treatment

Biological.replicate.1.of.7..panaxydol.treatment

Biological.replicate.3.of.6..negative.control

Biological.replicate.5.of.7..panaxydol.treatment

dcpA.knockout.rep1

Biological.replicate.2.of.7..falcarinol.treatment

Plogcy5plogcy3slide111norm

Biological.replicate.2.of.6..isoniazid.treatment

WT_log.phase_rep2

X2.5..vs..50..air.saturation.Replicate.5

Biological.replicate.2.of.7..ethambutol.treatment

Biological.replicate.4.of.7..panaxydol.treatment

X2.5..vs..50..air.saturation.Replicate.1

WT_stationary.phase_rep2

WT_stationary.phase_rep1

Biological.replicate.6.of.6..isoniazid.treatment

Biological.replicate.5.of.7..ethambutol.treatment

Stationary.cultures.control.without.induction.of.I.SceI.expression..T.0...Atc.

Bedaquiline.vs..DMSO.60min

Biological.replicate.4.of.7..falcarinol.treatment

WT.vs..DglnR.N_starvation_dye.swap_rep1

Biological.replicate.6.of.7..ethambutol.treatment

Slow.vs..Fast.Replicate.3

BatchCulture_LBTbroth_ExponentialPhase_Replicate2

BatchCulture_LBTbroth_ExponentialPhase_Replicate3

X3dbfcy5plogcy3slide603norm

BatchCulture_LBTbroth_ExponentialPhase_Replicate1

mc2155.pMind..vs.mc2155.pMind.6189.replicate.2

Wild.type.rep3

WT.vs..DamtR.N.surplus_.dyeswap_rep1

WT.with.vs..without.N_rep1

DglnR_without.vs..with.N_dyeswap_rep2

X2XR.rep1

X2XR.rep2

mc2155.pMind..vs.mc2155.pMind.6189.replicate.1

Wild.type.rep1.y

JR121..pJR29.VapC..vs..JR121..pJR230..VapBC..rep3

BatchCulture_LBTbroth_StationaryPhase_Replicate2

Biological.replicate.2.of.6..negative.control

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep2

M.smegmatis_mc2_155_dMSMEG_0166_study_wild.type_rep1

X4dbfcy3plogcy5slide903norm

Bedaquiline.vs..DMSO.120min

Comments