11750 VPS9Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11750	chr_22	VPS9	354719	358541	-	VPS9

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443858	Thaps11750.1, Thaps11750.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0135

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0255	0.31	150 10000

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9324	264628 UxaC 0.9095	10158 hypothetical protein 0.909	4502 hypothetical protein 0.9003	23137 hypothetical protein 0.8999	20753 PDI_a_family 0.8949
3842 hypothetical protein 0.8932	24829 Ubox 0.8932	20664 hypothetical protein 0.892	25254 hypothetical protein 0.8896

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
VPS9		Vacuolar sorting protein 9 (VPS9) domain; This domain acts as a GDP-GTP exchange factor (GEF). It...	cl19569	78.7824	5.70E-17	1131 - 1233	specific	251154
VPS9 superfamily		Vacuolar sorting protein 9 (VPS9) domain; This domain acts as a GDP-GTP exchange factor (GEF). It...	-	78.7824	5.70E-17	1131 - 1233	superfamily	267922

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45686	PHATRDRAFT_45686	234859	263906	Not available	Not available	Not available	309576

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0007242 -

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