13448 Sec1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13448 chr_6 Sec1 429039 431078 + Sec1

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps13448.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0093

Most Highly Correlated Transcripts

25977

syntaxin-interacting protein unc-18
0.9785

22524

hypothetical protein
0.9511

4898

hypothetical protein
0.9497

22407

hypothetical protein
0.9439

31136

Pkinase_Tyr
0.9428

20662

CactinC_cactus
0.9371

5664

hypothetical protein
0.9368

2927

hypothetical protein
0.9355

7978

Cation_efflux superfamily
0.935

23217

hypothetical protein
0.9349

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sec1 Sec1 family; Sec1 family. cl15415 377.358 3.98E-122 68 - 675 specific 250279
Sec1 superfamily Sec1 family; Sec1 family. - 377.358 3.98E-122 68 - 675 superfamily 265693

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11956 PHATRDRAFT_11956 274870 240469 435703 Cre11.g467699.t1.1 AT4G12120.1 494905

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006904 GO:0016192 -

GO:0006904

vesicle docking involved in exocytosis

Details: 
The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis.
GO Category: 
BP

GO:0016192

vesicle-mediated transport

Details: 
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO Category: 
BP

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