18303 Ras_like_GTPase superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18303 chr_7 Ras_like_GTPase superfamily 475680 476414 - Ras_like_GTPase superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448968 Thaps18303.2, Thaps18303.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0216

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0164
 0.39

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9885

9382

hypothetical protein
0.899

5701

hypothetical protein
0.8989

9351

hypothetical protein
0.891

8486

hypothetical protein
0.8883

262201

PP2Cc
0.8851

268078

MFS_1
0.8847

3730

hypothetical protein
0.8825

6402

hypothetical protein
0.8819

6957

hypothetical protein
0.8768

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 235.196 1.23E-78 11 - 194 superfamily 266525
COG1100 GTPase SAR1 and related small G proteins [General function prediction only] - 110.05 1.86E-29 11 - 194 multi-dom 224025

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
42624 Not available Not available Not available Not available Not available Not available 350023

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0015031 GO:0003924 GO:0003925 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0003925

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments