20567 MS_channel superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20567 chr_1 MS_channel superfamily 58276 62358 - MS_channel superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0245

Most Highly Correlated Transcripts

8979

hypothetical protein
0.903

4047

hypothetical protein
0.8929

8762

SNF2_N
0.8811

23332

COG0790
0.88

24063

COG3899
0.8776

22185

ANK
0.8709

2035

hypothetical protein
0.8671

10409

hypothetical protein
0.8665

25451

AAA superfamily
0.8635

8366

hypothetical protein
0.8629

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MS_channel superfamily Mechanosensitive ion channel; Two members of this protein family from M. jannaschii have been... - 68.7622 5.68E-13 905 - 1062 superfamily 250229
MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] - 69.5642 8.24E-13 874 - 1043 multi-dom 223740

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45221 PHATRDRAFT_45221 202805 325666 Not available Cre13.g591100.t1.1 AT5G19520.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016020 GO:0004308 -

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0004308

exo-alpha-sialidase activity

Details: 
Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates.
GO Category: 
MF

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