22016 ABC_MTABC3_MDL1_MDL2
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
22016 chr_3 ABC_MTABC3_MDL1_MDL2 2241019 2246532 + ABC_MTABC3_MDL1_MDL2
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0108
Normalized Mean Residue
Thaps_bicluster_0103
0.42
(bd1841) CAP10 superfamily
0.9316
(bd415) arom_aa_hydroxylase superfamily
0.9277
(bd410) HNHc
0.9049
(bd1840) NA
0.8838
(bd885) NA
0.8751
(bd884) NA
0.8422
(bd1941) NA
0.8394
(bd1839) NA
0.8363
(bd1756) NA
0.8296
Patched
0.8208
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_MTABC3_MDL1_MDL2 ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also... cl17201 385.354 3.49E-123 520 - 772 specific 213216
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 385.354 3.49E-123 520 - 772 superfamily 266551
ABC_MTABC3_MDL1_MDL2 ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also... cl17201 385.354 3.49E-123 520 - 772 specific 213216
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 385.354 3.49E-123 520 - 772 superfamily 266551
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 103.527 7.16E-24 147 - 403 superfamily 250039
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 103.527 7.16E-24 147 - 403 superfamily 250039
MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] - 331.315 1.87E-99 128 - 773 multi-dom 224055
COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General... - 260.586 6.14E-75 525 - 1059 multi-dom 224048
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 259539 Not available Not available Not available Not available
KEGG description KEGG Pathway
ABC transporters map02010
GO:0005524 GO:0006810 GO:0016021 GO:0042626 GO:0016887 GO:0000166 GO:0017111 GO:0004298 GO:0004299 -

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

ATPase activity, coupled to transmembrane movement of substances

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO Category: 
MF

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA
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