22018 (Tp_HSF_2.7h) HSF_DNA-bind superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22018 chr_3 (Tp_HSF_2.7h) HSF_DNA-bind superfamily 2252855 2255050 - HSF_DNA-bind superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452737 Thaps22018.2, Thaps22018.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0483

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0209
 0.34

Most Highly Correlated Transcripts

bd1802

(bd1802) NA
0.948

bd739

(bd739) NA
0.9384

bd616

(bd616) NA
0.9049

bd824

(bd824) NA
0.8794

bd1891

(bd1891) COG3899
0.8723

bd1877

(bd1877) NA
0.8663

bd1803

(bd1803) NA
0.8573

7335

hypothetical protein
0.8416

bd738

(bd738) NA
0.8107

bd1801

(bd1801) NA
0.8088

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 69.6224 2.58E-14 139 - 224 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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