23419 M6dom_TIGR03296
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23419 chr_7 M6dom_TIGR03296 654384 658020 - M6dom_TIGR03296

Synonyms

NCBI ID Ensembl Genomes exon ID
7449188 Thaps23419.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0459

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0153
 0.31

Most Highly Correlated Transcripts

bd1771

(bd1771) NA
0.8709

bd1880

(bd1880) NA
0.8472

20644

hypothetical protein
0.842

21861

hypothetical protein
0.8407

23521

hypothetical protein
0.8371

6273

LRR_RI superfamily
0.836

268234

hypothetical protein
0.8359

bd1770

(bd1770) NA
0.8209

269264

hypothetical protein
0.8015

270222

0.8006

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
M6dom_TIGR03296 M6 family metalloprotease domain; This model describes a metalloproteinase domain, with a... cl11525 177.61 3.54E-49 166 - 459 specific 234161
Peptidase_M6 superfamily Immune inhibitor A peptidase M6; The insect pathogenic Gram-positive Bacillus thuringiensis... - 177.61 3.54E-49 166 - 459 superfamily 245672

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44695 PHATRDRAFT_44695 213584 116293 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005507 GO:0006508 GO:0008237 GO:0008270 -

GO:0005507

copper ion binding

Details: 
Interacting selectively and non-covalently with copper (Cu) ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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