23976 SBF superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23976 chr_9 SBF superfamily 505033 506594 + SBF superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443539 Thaps23976.3, Thaps23976.2, Thaps23976.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0381

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0017
 0.42

Most Highly Correlated Transcripts

21795

SCP superfamily
0.8642

269655

PRK09330
0.8509

23829

hypothetical protein
0.8434

263313

Peptidase_M8 superfamily
0.8398

bd1888

(bd1888) NA
0.8391

6640

hypothetical protein
0.8164

7335

hypothetical protein
0.8142

25713

hypothetical protein
0.8107

6639

hypothetical protein
0.8105

268410

(CDK1) STKc_CDK_like
0.8104

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SBF superfamily Sodium Bile acid symporter family; This family consists of Na+/bile acid co-transporters. These... - 113.97 4.93E-29 11 - 281 superfamily 267570

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_34425 PHATRDRAFT_34425 202580 255164 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006814 GO:0008508 GO:0016020 -

GO:0006814

sodium ion transport

Details: 
The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0008508

bile acid:sodium symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in).
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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