2454 V-SNARE_C superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2454 chr_2 V-SNARE_C superfamily 1048532 1049396 - V-SNARE_C superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7444639 Thaps2454.3, Thaps2454.2, Thaps2454.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0156

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0121
 0.36

Most Highly Correlated Transcripts

36669

TPT
0.914

261400

NA
0.9095

4108

hypothetical protein
0.9084

26991

GRX_GRXh_1_2_like
0.8946

37934

GRX_PICOT_like
0.8729

16295

FBPase
0.872

8486

hypothetical protein
0.8708

36641

Aldolase_Class_I superfamily
0.8693

11479

hypothetical protein
0.8659

20405

GRX_GRXh_1_2_like
0.8647

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
V-SNARE_C superfamily Snare region anchored in the vesicle membrane C-terminus; Within the SNARE proteins interactions in... - 57.2225 1.35E-11 120 - 184 superfamily 152787

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_52139 PHATRDRAFT_52139 200135 285361 253095 Cre12.g554200.t1.1 AT5G50440.1 Not available

KEGG

KEGG description KEGG Pathway
SNARE interactions in vesicular transport map04130

GO Terms

GO:0006886 GO:0016021 -

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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