25076 S1_like superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
25076	chr_15	S1_like superfamily	837814	839413	+	S1_like superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7450310	Thaps25076.2, Thaps25076.1, Thaps25076.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0194

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0247	0.36	2.5 17

Most Highly Correlated Transcripts

38991 COG1565 0.9153	6692 hypothetical protein 0.8655	21141 RibD 0.8543	25162 hypothetical protein 0.8515	9388 hypothetical protein 0.8421	1747 hypothetical protein 0.8385
21955 hypothetical protein 0.838	269593 (RPT4) RPT1 0.8353	23747 hypothetical protein 0.8321	11286 hypothetical protein 0.8293

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	78.8201	9.40E-19	57 - 149	superfamily	263921
PRK08059		general stress protein 13; Validated	-	62.7569	1.92E-12	58 - 153	multi-dom	181215

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_39066	PHATRDRAFT_39066	Not available	7651	107756	Cre12.g489600.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003723 -

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