2553 MDR1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2553 chr_2 MDR1 1272636 1273629 - MDR1

Synonyms

NCBI ID Ensembl Genomes exon ID
7444689 Thaps2553.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0213

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0178
 0.28

Most Highly Correlated Transcripts

20405

GRX_GRXh_1_2_like
0.9576

31169

PRX_BCP
0.9305

20933

hypothetical protein
0.9037

4270

Scramblase superfamily
0.8982

26991

GRX_GRXh_1_2_like
0.8919

40713

SodA
0.8897

261608

PLN02585
0.8896

3071

NA
0.8859

21978

hypothetical protein
0.8857

1788

hypothetical protein
0.8854

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family; This... cl16912 292.968 3.02E-97 29 - 323 specific 176228
MDR superfamily Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family; The... - 292.968 3.02E-97 29 - 323 superfamily 266485
Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion... - 174.843 2.03E-51 29 - 326 multi-dom 223677

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49717 PHATRDRAFT_49717 274473 205038 415375 Not available Not available 336989

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008270 GO:0016491 GO:0003960 -

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0003960

NADPH:quinone reductase activity

Details: 
Catalysis of the reaction: NADPH + H+ + quinone = NADP+ + semiquinone.
GO Category: 
MF

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