25960 PLN02853
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25960 chr_5 PLN02853 191445 193334 - PLN02853

Synonyms

NCBI ID Ensembl Genomes exon ID
7447265 Thaps25960.1, Thaps25960.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0027

Most Highly Correlated Transcripts

16295

FBPase
0.9221

38964

Chorismate_synthase
0.9146

261400

NA
0.9084

262977

NA
0.9076

263132

Phytochelatin superfamily
0.9073

4524

DHQS
0.9052

3461

PRK00927
0.9016

30701

PRK05279
0.901

24525

hypothetical protein
0.9008

1520

hypothetical protein
0.8985

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II... cl00268 322.188 1.47E-107 227 - 486 specific 238277
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 322.188 1.47E-107 227 - 486 superfamily 260313
PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain - 922.149 0 1 - 499 multi-dom 215458

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_25331 PHATRDRAFT_25331 275672 62507 445319 Cre09.g389430.t1.1 AT4G39280.1 348851

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004826 GO:0005524 GO:0006432 GO:0005737 GO:0004812 GO:0006418 GO:0009328 -

GO:0004826

phenylalanine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006432

phenylalanyl-tRNA aminoacylation

Details: 
The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0009328

phenylalanine-tRNA ligase complex

Details: 
An enzyme complex that catalyzes the ligation of phenylalanine to tRNA(Phe), forming L-phenylalanyl-tRNA(Phe).
GO Category: 
CC

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