260900 PRK05347
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
260900 chr_1 PRK05347 1199815 1202690 - PRK05347

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0090
 0.39

Most Highly Correlated Transcripts

ThpsCp110

(rpl6) ribosomal protein L6
0.8765

ThpsCp082

(rpl34) ribosomal protein L34
0.8686

24832

hypothetical protein
0.8656

ThpsCp103

(rpl16) ribosomal protein L16
0.8627

ThpsCp134

(rpl34) ribosomal protein L34
0.8627

ThpsCp105

(rps17) ribosomal protein S17
0.8591

ThpsCp097

(rpl23) ribosomal protein L23
0.8567

ThpsCp098

(rpl2) ribosomal protein L2
0.8531

6610

hypothetical protein
0.8502

ThpsCp108

(rpl5) ribosomal protein L5
0.85

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 349.243 6.73E-114 88 - 414 superfamily 260139
tRNA-synt_1c_C superfamily tRNA synthetases class I (E and Q), anti-codon binding domain; Other tRNA synthetase sub-families... - 187.855 4.23E-55 412 - 605 superfamily 252270
tRNA-synt_1c_C superfamily tRNA synthetases class I (E and Q), anti-codon binding domain; Other tRNA synthetase sub-families... - 187.855 4.23E-55 412 - 605 superfamily 252270
tRNA_bindingDomain superfamily The tRNA binding domain is also known as the Myf domain in literature. This domain is found in a... - 124.263 3.51E-33 656 - 770 superfamily 260352
PRK05347 glutaminyl-tRNA synthetase; Provisional - 908.712 0 36 - 625 multi-dom 235424

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16963 PHATRDRAFT_16963 256495 27506 441722 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004818 GO:0005524 GO:0006424 GO:0004812 GO:0006418 GO:0004819 -

GO:0004818

glutamate-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006424

glutamyl-tRNA aminoacylation

Details: 
The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA.
GO Category: 
BP

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004819

glutamine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-glutamine + tRNA(Gln) = AMP + diphosphate + L-glutaminyl-tRNA(Gln).
GO Category: 
MF

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