262480 MFS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262480 chr_5 MFS 792169 794185 - MFS

Synonyms

NCBI ID Ensembl Genomes exon ID
7446439 Thaps262480.4, Thaps262480.2, Thaps262480.1, Thaps262480.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0085

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0078
 0.42

Most Highly Correlated Transcripts

5775

PKc_like superfamily
0.8853

28317

trimeric_dUTPase
0.8852

32706

VRG4
0.8722

37523

S_TKc
0.8719

bd1863

(bd1863) NA
0.8655

261211

FGE-sulfatase superfamily
0.8612

20587

hypothetical protein
0.8595

bd1820

(bd1820) Fasciclin
0.858

23058

MPP_superfamily superfamily
0.8551

bd1658

(bd1658) NA
0.8549

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 92.7621 7.75E-21 115 - 473 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 92.7621 7.75E-21 115 - 473 superfamily 119392
MFS_1 Major Facilitator Superfamily; Major Facilitator Superfamily. - 92.4828 7.93E-21 115 - 443 multi-dom 254360

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_1598 PHATRDRAFT_1598 147770 165241 Not available Not available Not available 482737

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0015520 GO:0015904 GO:0016021 -

GO:0015520

tetracycline:hydrogen antiporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + tetracycline(in) = H+(in) + tetracycline(out).
GO Category: 
MF

GO:0015904

tetracycline transport

Details: 
The directed movement of tetracycline into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles).
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

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