262535 NrfG
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
262535 chr_5 NrfG 1256705 1259758 + NrfG

Synonyms

NCBI ID Ensembl Genomes exon ID
7453182 Thaps262535.2, Thaps262535.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0485

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0085
 0.45

Most Highly Correlated Transcripts

bd1749

(bd1749) NA
0.9225

bd1891

(bd1891) COG3899
0.8777

25430

hypothetical protein
0.8547

25428

hypothetical protein
0.8515

bd739

(bd739) NA
0.8421

bd1802

(bd1802) NA
0.8286

23215

Ubox
0.8286

35259

hypothetical protein
0.8076

bd1948

(bd1948) NA
0.7992

9145

hypothetical protein
0.7919

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 61.6272 3.00E-11 723 - 838 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 61.6272 3.00E-11 723 - 838 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 61.6272 3.00E-11 723 - 838 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 61.6272 3.00E-11 723 - 838 superfamily 238112
NrfG FOG: TPR repeat [General function prediction only] - 88.3645 4.02E-19 572 - 895 multi-dom 223533
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 62.0094 1.56E-11 491 - 584 multi-dom 257749

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 199400 318686 99618 Cre12.g495250.t1.1 Not available 529177

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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