263344 CitE
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
263344 chr_8 CitE 144104 145735 - CitE

Synonyms

NCBI ID Ensembl Genomes exon ID
7452413 Thaps263344.2, Thaps263344.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0405

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0055
 0.46

Most Highly Correlated Transcripts

bd721

(bd721) NA
0.8474

bd1941

(bd1941) NA
0.8166

bd884

(bd884) NA
0.8038

263343

CitE
0.8007

bd716

(bd716) MviM
0.7868

bd1842

(bd1842) NA
0.782

bd410

(bd410) HNHc
0.7818

bd1841

(bd1841) CAP10 superfamily
0.7782

bd1760

(bd1760) ACAD superfamily
0.7753

34620

PX_SNX1_2_like
0.7741

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved... cl00509 205.131 3.54E-63 376 - 533 specific 239535
hot_dog superfamily The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier... - 205.131 3.54E-63 376 - 533 superfamily 260469
CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism] cl17231 231.805 2.18E-71 46 - 333 specific 225184
HpcH_HpaI superfamily HpcH/HpaI aldolase/citrate lyase family; This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic... - 231.805 2.18E-71 46 - 333 superfamily 266573

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 160273 319999 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008815 GO:0009346 -

GO:0008815

citrate (pro-3S)-lyase activity

Details: 
Catalysis of the reaction: citrate = acetate + oxaloacetate.
GO Category: 
MF

GO:0009346

citrate lyase complex

Details: 
Citrate lyase is a multienzyme complex with three constituents: the alpha subunit, citrate-ACP transferase; the beta subunit, citryl-ACP lyase; and the gamma subunit, an acyl-carrier protein which also carries the prosthetic group components. All three subunits are required for citrate lyase enzyme activity.
GO Category: 
CC

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