264815 GluZincin superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264815 chr_22 GluZincin superfamily 508489 510755 - GluZincin superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442843 Thaps264815.3, Thaps264815.2, Thaps264815.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0013

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0242
 0.38

Most Highly Correlated Transcripts

26991

GRX_GRXh_1_2_like
0.8673

36649

SufE superfamily
0.8642

8784

hypothetical protein
0.8625

23973

BT1
0.8612

22127

hypothetical protein
0.8595

3126

plant_peroxidase_like superfamily
0.8576

23817

hypothetical protein
0.8569

268453

PRK11183
0.8558

22682

hypothetical protein
0.8535

22846

hypothetical protein
0.8487

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GluZincin superfamily Peptidase Gluzincin family (thermolysin-like proteinases, TLPs) includes peptidases M1, M2, M3, M4... - 602.236 0 69 - 701 superfamily 265459
Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism] - 327.308 3.12E-101 20 - 701 multi-dom 223416

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available AT1G67690.1 329905

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 GO:0008237 GO:0008270 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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