268629 PseudoU_synth_RluCD_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268629 chr_4 PseudoU_synth_RluCD_like 450445 452195 - PseudoU_synth_RluCD_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7447446 Thaps268629.1, Thaps268629.3, Thaps268629.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0165
 0.36

Most Highly Correlated Transcripts

34735

DRE_TIM_metallolyase superfamily
0.9147

34006

Sun
0.9146

bd1945

(bd1945) NA
0.9084

22404

DEXDc superfamily
0.9075

32395

RNA_pol
0.9065

25120

U3_assoc_6 superfamily
0.9053

42282

HA2
0.9028

17110

rbgA
0.9017

22334

hypothetical protein
0.8999

24016

Ebp2 superfamily
0.8992

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 100.875 2.55E-25 146 - 340 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 100.875 2.55E-25 146 - 340 superfamily 260207

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_44334 PHATRDRAFT_44334 189194 153403 Not available Cre10.g462600.t1.1 AT4G21770.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0004730 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

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