268744 SUA5Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268744	chr_4	SUA5	1718601	1720184	-	SUA5

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443739	Thaps268744.4, Thaps268744.2, Thaps268744.1, Thaps268744.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0223

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0101	0.32	0.0013 0.0095

Most Highly Correlated Transcripts

268145 PLN00040 0.9464	268417 hypothetical protein 0.9339	bd1709 (bd1709) NA 0.9312	23900 hypothetical protein 0.9294	29705 18S_RNA_Rcl1p 0.926	24715 WD40 superfamily 0.9238
32807 DEADc 0.9231	30833 Bystin 0.92	31465 Brix 0.9192	34027 SrmB 0.9162

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SUA5		Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	cl00305	172.414	4.98E-51	52 - 242	specific	223088
Sua5_yciO_yrdC superfamily		Telomere recombination; This domain has been shown to bind preferentially to dsRNA. The domain is...	-	172.414	4.98E-51	52 - 242	superfamily	260340

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_11434	PHATRDRAFT_11434	194889	300006	425634	Cre05.g234657.t1.1	Not available	549986

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005554 -

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