31845 PLN02428
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31845 chr_2 PLN02428 113696 114968 - PLN02428

Synonyms

NCBI ID Ensembl Genomes exon ID
7452159 Thaps31845.1, Thaps31845.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0108

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0103
 0.42

Most Highly Correlated Transcripts

bd1941

(bd1941) NA
0.9163

240

AAT_I superfamily
0.9153

2674

hypothetical protein
0.9004

3426

zf-DNL superfamily
0.8966

7469

hypothetical protein
0.8949

1463

hypothetical protein
0.8947

3146

hypothetical protein
0.8929

25535

hypothetical protein
0.8923

7006

hypothetical protein
0.8894

22846

hypothetical protein
0.8892

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN02428 lipoic acid synthase - 607.517 0 46 - 411 multi-dom 215236

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_18029 PHATRDRAFT_18029 172421 301716 419686 Cre08.g359700.t1.2 Not available 562522

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0009107 GO:0016992 GO:0003824 GO:0005506 -

GO:0009107

lipoate biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid.
GO Category: 
BP

GO:0016992

lipoate synthase activity

Details: 
Catalysis of the reaction: protein N6-(octanoyl)lysine + 2 sulfur + 2 S-adenosyl-L-methionine = protein N6-(lipoyl)lysine + 2 L-methionine + 2 5'-deoxyadenosyl.
GO Category: 
MF

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

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