33806 Mago_nashi
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33806 chr_4 Mago_nashi 1895956 1896717 + Mago_nashi

Synonyms

NCBI ID Ensembl Genomes exon ID
7443771 Thaps33806.4, Thaps33806.3, Thaps33806.1, Thaps33806.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0185

Most Highly Correlated Transcripts

4302

DUF788 superfamily
0.9381

3107

hypothetical protein
0.9057

bd1837

(bd1837) NA
0.9018

1467

hypothetical protein
0.9

6093

hypothetical protein
0.8917

11490

hypothetical protein
0.882

33075

RimI
0.8794

11590

hypothetical protein
0.879

34996

(Cdc37) CDC37_C
0.8778

7588

hypothetical protein
0.8769

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Mago_nashi Mago nashi proteins, integral members of the exon junction complex; Members of this family, which... cl03715 281.843 3.37E-98 9 - 152 specific 199917
Mago_nashi superfamily Mago nashi proteins, integral members of the exon junction complex; Members of this family, which... - 281.843 3.37E-98 9 - 152 superfamily 199940

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_33540 PHATR_33540 250494 317263 440585 Cre09.g392692.t1.1 AT1G02140.1 314749

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005634 GO:0007530 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0007530

sex determination

Details: 
Any process that establishes and transmits the specification of sexual status of an individual organism.
GO Category: 
BP

Add comment

Log in to post comments