34850 lon
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34850 chr_6 lon 1097520 1100733 - lon

Synonyms

NCBI ID Ensembl Genomes exon ID
7445979 Thaps34850.4, Thaps34850.2, Thaps34850.3, Thaps34850.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0107

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0242
 0.38

Most Highly Correlated Transcripts

1650

hypothetical protein
0.8705

268453

PRK11183
0.8612

16695

Ist1
0.8494

263653

P-ATPase-V
0.8483

24376

TerD_like
0.8452

25127

hypothetical protein
0.841

21603

hypothetical protein
0.8379

264361

pepN
0.8329

263848

Voltage_gated_ClC superfamily
0.8309

3330

RGS
0.8298

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 72.1787 1.98E-14 506 - 670 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 72.1787 1.98E-14 506 - 670 superfamily 267297
Lon_C superfamily Lon protease (S16) C-terminal proteolytic domain; The Lon serine proteases must hydrolyse ATP to... - 287.578 4.34E-90 768 - 981 superfamily 191262
LON ATP-dependent protease La (LON) domain; This domain has been shown to be part of the PUA... cl19481 92.0852 8.06E-21 161 - 381 specific 251146
LON superfamily ATP-dependent protease La (LON) domain; This domain has been shown to be part of the PUA... - 92.0852 8.06E-21 161 - 381 superfamily 267834
lon ATP-dependent protease La; This protein is induced by heat shock and other stresses in E. coli, B.... - 1012.6 0 163 - 981 multi-dom 233119

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_18202 PHATRDRAFT_18202 176774 240007 453205 Cre06.g281350.t1.2 AT5G26860.1 543049

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004176 GO:0004252 GO:0006508 GO:0006510 GO:0000166 GO:0017111 GO:0005524 GO:0004289 GO:0008132 GO:0008243 GO:0008991 GO:0016808 -

GO:0004176

ATP-dependent peptidase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds.
GO Category: 
MF

GO:0004252

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0006510

NA

Details: 
NA
GO Category: 
NA

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0004289

NA

Details: 
NA
GO Category: 
NA

GO:0008132

NA

Details: 
NA
GO Category: 
NA

GO:0008243

NA

Details: 
NA
GO Category: 
NA

GO:0008991

NA

Details: 
NA
GO Category: 
NA

GO:0016808

NA

Details: 
NA
GO Category: 
NA

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