35956 SIR2 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35956 chr_8 SIR2 superfamily 308938 310156 - SIR2 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445546 Thaps35956.3, Thaps35956.1, Thaps35956.2, Thaps35956.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0137

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0136
 0.28

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9538

5038

DUF179
0.9435

3913

LCM
0.9378

2702

Pro_isomerase
0.9294

20664

hypothetical protein
0.9274

261400

NA
0.9264

7469

hypothetical protein
0.9244

23170

hypothetical protein
0.9232

11187

hypothetical protein
0.9212

6594

hypothetical protein
0.9212

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SIR2 superfamily SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze... - 326.896 1.39E-111 71 - 308 superfamily 260250

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 225537 299116 77385 Not available Not available 313641

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005677 GO:0006342 GO:0006355 GO:0008939 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005677

chromatin silencing complex

Details: 
Any protein complex that mediates changes in chromatin structure that result in transcriptional silencing.
GO Category: 
CC

GO:0006342

chromatin silencing

Details: 
Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin.
GO Category: 
BP

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0008939

nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity

Details: 
Catalysis of the reaction: 5,6-dimethylbenzimidazole + nicotinate D-ribonucleotide = alpha-ribazole 5'-phosphate + H(+) + nicotinate.
GO Category: 
MF

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