36837 PTZ00265
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36837 chr_12 PTZ00265 207462 211957 - PTZ00265

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0175

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0181
 0.40

Most Highly Correlated Transcripts

bd1893

(bd1893) NA
0.9091

bd1857

(bd1857) DnaJ
0.9001

bd758

(bd758) NA
0.8972

bd687

(bd687) NA
0.8943

bd463

(bd463) Aa_trans superfamily
0.8932

24285

hypothetical protein
0.8924

bd843

(bd843) NA
0.8795

bd1078

(bd1078) NA
0.8752

22963

WD40 superfamily
0.8713

11594

DUF2042 superfamily
0.8708

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 311.396 5.65E-97 1112 - 1351 superfamily 266551
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 311.396 5.65E-97 1112 - 1351 superfamily 266551
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 109.305 7.39E-26 91 - 355 superfamily 250039
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 109.305 7.39E-26 91 - 355 superfamily 250039
PTZ00265 multidrug resistance protein (mdr1); Provisional - 461.806 3.24E-138 86 - 1345 multi-dom 240339

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 155859 Not available 427008 Not available AT3G28415.1 521913

KEGG

KEGG description KEGG Pathway
ABC transporters map02010

GO Terms

GO:0005524 GO:0006810 GO:0016021 GO:0042626 GO:0016887 GO:0000166 GO:0017111 GO:0004298 GO:0004299 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0042626

ATPase activity, coupled to transmembrane movement of substances

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments